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21 Cards in this Set

  • Front
  • Back
Define epigenetics
-study of mitotically heritable changes in gene expression
-that occur without changes in DNA sequence
What defines a cell type?
The set of genes expressed by the cell
How does a cell 'know' which genes to express?
-sequence specific transcription factors activate/ repress genes
-epigenetic marks
Outline the roles played by epigenetic marks.
-mark beginning and end of genes
-allow pieces of information within genes to be distinguished
-gives structure to chromosome - shows beginning, centre and end of chromosome
- ensures chromosomes fold up correctly
-alters how we read each gene
-can lead to expression/ inactivation of gene or more subtle changes
Explain why epigenetic control is important in development.
- Important for cell structure and differentiation
How are genetically identical twins formed
-at 2 cell stage of embryo development, splitting occurs and two separate embyos formed from same sperm and egg
Why is mitotic heritability of epigenetic marks important?
-ensures same sets of genes expressed in daughter cells
-ensures tissue homogeneity (liver cells divide to give more liver cells)
-so cell identity is maintained
What is the replacement of epigenetic marks called?
When is this necessary?
-epigenetic reprogramming
-when tissue heterogeneity is required
-when daughter cells must carry out very different function to parent cells, e.g. formation of eggs + sperm (sperm v. different to somatic cells) and formation of zygote (egg + sperm marks must be replaced by those relevant to totipotent cells
What is chromatin?
DNA wrapped around histones
Why must DNA be wrapped around histones
so that the 2m molecules can be compressed into the 10 micron nucleus
Contrast the functions of tightly and loosely packed chromatin
-tight: DNA less accessible to transcription
-loose: DNA more accessible to transcription
Define 'nucleosome'.
-smallest unit of chromatin
-146 bp of DNA wrapped around a histone octamer
-making 1 and 3/4 turns around the octamer
What does the histone octamer contain?
How is it locked together
2x H2A, H2B, H3 and H4 and one H1, locking the spool together
Why do histones bind to DNA?
-they are positively charged
-because they are lysine and arginine rich
-DNA is negatively charged due to electronegative oxygen in phosphate groups
How is the chromatin arranged and stained in euchromatin?
-nucleosomes far apart, 'beads on a string' with linker DNA between
-open
-less darkly stained
The most open form of heterochromatin is formed from euchromatin...
-using interactions between H1 proteins in euchromatin to form a solenoidal 30nm fibre
How can further condensation occur?
When does this happen?
-using scaffold proteins
-in interphase
How can further condensation occur?
When does this happen?
What does the chromosome look like now?
-addition of more scaffold proteins
-in metaphase
-X-shaped
Outline the features of facultative heterochromatin.
-differs by cell type/ time
-associated with gene silencing
-allows expression of certain genes and not others
Outline the features of constituative heterochromatin
-same in all cell types
-performs structural role
-found at centromeres, telomeres and portions of sex chromosomes
The why chromosome is characterised by large amounts of...
-heterochromatin, apart fromtestes genes